Miniloc Island Resort has a total of 43 rooms. Like Lagen Islands Resort, it has a variety of accommodation styles to choose from. There are Water Cottages and Seaview Rooms built on stilts, Garden Cottages and Family Cottages surrounded by tropical plants, Cliff Cottages nestled in the hillside and Beachside Rooms right in front of the beach.

The cottages and rooms at Miniloc Island Resort are built with thatched roofs and furnished with indigenous Filipino materials. The local flavor extends to the cottages and rooms from the wooden floors and walls made of woven bamboo slats (locally called sawali) to furniture hand-made from natural materials such as bamboo and rattan. All cottages and rooms are air-conditioned and have a mini bar, a hair dryer and private toilet, shower facilities and private verandahs that offer views of the cove and the nearby islands.